James Thompson Archives - Research Portal

Seeking Northlake: Place, Technology, and Public as Enabling Constraints for Urban Transdisciplinary Research

Brown, Megan; Benson, G. Odessa Gonzalez; Keel, Roneva; Mahoney, Eleanor; Porter, Jennifer; Thompson, James. (2017). Seeking Northlake: Place, Technology, and Public as Enabling Constraints for Urban Transdisciplinary Research. Cities, 60, 314 – 322.

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Abstract

This article reviews the urban transdisciplinary research of the Northlake Collective, a multidisciplinary group of graduate students in the University of Washington's Lake Union Laboratory. Through a series of place-based investigations, we explored a small slice of Seattle ultimately seeking to engage the public through an online digital humanities portal. The broader goal of our work and this paper is to address how we, as a team of emerging scholars, understand and investigate 'cities' in the current century as both networked at the global scale and dynamic places for everyday interactions and processes. The paradoxes and complexity inherent to understanding the 'city' and how to address these concerns led us to develop a framework that might enrich grounded urban theory through the 'enabling constraints' of place, technology and public. The productive character of these three concepts, combined with the practical constraints and interrelationships they bring to bear, allowed us to deepen our work and produced the context for our research of Northlake. We propose this tripartite framework for exploring the contemporary city via the structure afforded by transdisciplinary, born-digital collaborations. (C) 2016 Elsevier Ltd. All rights reserved.

Keywords

Memory-work; Local Trap; City; Politics; Context; Cities; Geographies; Thinking; Systems; Agency; Transdisciplinary Urbanism; Enabling Constraints; Place; Technology; Public; Collaboration

A Roadmap for Urban Evolutionary Ecology

Rivkin, L. Ruth; Santangelo, James S.; Alberti, Marina; Aronson, Myla F. J.; De Keyzer, Charlotte W.; Diamond, Sarah E.; Fortin, Marie-josee; Frazee, Lauren J.; Gorton, Amanda J.; Hendry, Andrew P.; Liu, Yang; Losos, Jonathan B.; Macivor, J. Scott; Martin, Ryan A.; Mcdonnell, Mark J.; Miles, Lindsay S.; Munshi-south, Jason; Ness, Robert W.; Newman, Amy E. M.; Stothart, Mason R.; Theodorou, Panagiotis; Thompson, Ken A.; Verrelli, Brian C.; Whitehead, Andrew; Winchell, Kristin M.; Johnson, Marc T. J. (2019). A Roadmap for Urban Evolutionary Ecology. Evolutionary Applications, 12(3), 384 – 398.

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Abstract

Urban ecosystems are rapidly expanding throughout the world, but how urban growth affects the evolutionary ecology of species living in urban areas remains largely unknown. Urban ecology has advanced our understanding of how the development of cities and towns change environmental conditions and alter ecological processes and patterns. However, despite decades of research in urban ecology, the extent to which urbanization influences evolutionary and eco-evolutionary change has received little attention. The nascent field of urban evolutionary ecology seeks to understand how urbanization affects the evolution of populations, and how those evolutionary changes in turn influence the ecological dynamics of populations, communities, and ecosystems. Following a brief history of this emerging field, this Perspective article provides a research agenda and roadmap for future research aimed at advancing our understanding of the interplay between ecology and evolution of urban-dwelling organisms. We identify six key questions that, if addressed, would significantly increase our understanding of how urbanization influences evolutionary processes. These questions consider how urbanization affects nonadaptive evolution, natural selection, and convergent evolution, in addition to the role of urban environmental heterogeneity on species evolution, and the roles of phenotypic plasticity versus adaptation on species' abundance in cities. Our final question examines the impact of urbanization on evolutionary diversification. For each of these six questions, we suggest avenues for future research that will help advance the field of urban evolutionary ecology. Lastly, we highlight the importance of integrating urban evolutionary ecology into urban planning, conservation practice, pest management, and public engagement.

Keywords

Urban Ecology (biology); Climate Change; Urban Growth; Species Diversity; Urbanization; Citizen Science; Community Engagement; Eco-evolutionary Feedback; Gene Flow; Landscape Genetics; Urban Evolution; Urban Socioecology; Mouse Peromyscus-leucopus; Rapid Evolution; Population Genomics; Selection; Habitat; Differentiation; Framework; Environments; Biodiversity; Eco-evolutionary Feedback

Global Urban Environmental Change Drives Adaptation in White Clover

Santangelo, James S.; Ness, Rob W.; Cohan, Beata; Fitzpatrick, Connor R.; Innes, Simon G.; Koch, Sophie; Miles, Lindsay S.; Munim, Samreen; Peres-neto, Pedro R.; Prashad, Cindy; Tong, Alex T.; Aguirre, Windsor E.; Akinwole, Philips O.; Alberti, Marina; Alvarez, Jackie; Anderson, Jill T.; Anderson, Joseph J.; Ando, Yoshino; Andrew, Nigel R.; Angeoletto, Fabio; Anstett, Daniel N.; Anstett, Julia; Aoki-goncalves, Felipe; Arietta, A. Z. Andis; Arroyo, Mary T. K.; Austen, Emily J.; Baena-diaz, Fernanda; Barker, Cory A.; Baylis, Howard A.; Beliz, Julia M.; Benitez-mora, Alfonso; Bickford, David; Biedebach, Gabriela; Blackburn, Gwylim S.; Boehm, Mannfred M. A.; Bonser, Stephen P.; Bonte, Dries; Bragger, Jesse R.; Branquinho, Cristina; Brans, Kristien, I; Bresciano, Jorge C.; Brom, Peta D.; Bucharova, Anna; Burt, Briana; Cahill, James F.; Campbell, Katelyn D.; Carlen, Elizabeth J.; Carmona, Diego; Castellanos, Maria Clara; Centenaro, Giada; Chalen, Izan; Chaves, Jaime A.; Chavez-pesqueira, Mariana; Chen, Xiao-yong; Chilton, Angela M.; Chomiak, Kristina M.; Cisneros-heredia, Diego F.; Cisse, Ibrahim K.; Classen, Aimee T.; Comerford, Mattheau S.; Fradinger, Camila Cordoba; Corney, Hannah; Crawford, Andrew J.; Crawford, Kerri M.; Dahirel, Maxime; David, Santiago; De Haan, Robert; Deacon, Nicholas J.; Dean, Clare; Del-val, Ek; Deligiannis, Eleftherios K.; Denney, Derek; Dettlaff, Margarete A.; Dileo, Michelle F.; Ding, Yuan-yuan; Dominguez-lopez, Moises E.; Dominoni, Davide M.; Draud, Savannah L.; Dyson, Karen; Ellers, Jacintha; Espinosa, Carlos, I; Essi, Liliana; Falahati-anbaran, Mohsen; Falcao, Jessica C. F.; Fargo, Hayden T.; Fellowes, Mark D. E.; Fitzpatrick, Raina M.; Flaherty, Leah E.; Flood, Padraic J.; Flores, Maria F.; Fornoni, Juan; Foster, Amy G.; Frost, Christopher J.; Fuentes, Tracy L.; Fulkerson, Justin R.; Gagnon, Edeline; Garbsch, Frauke; Garroway, Colin J.; Gerstein, Aleeza C.; Giasson, Mischa M.; Girdler, E. Binney; Gkelis, Spyros; Godsoe, William; Golemiec, Anneke M.; Golemiec, Mireille; Gonzalez-lagos, Cesar; Gorton, Amanda J.; Gotanda, Kiyoko M.; Granath, Gustaf; Greiner, Stephan; Griffiths, Joanna S.; Grilo, Filipa; Gundel, Pedro E.; Hamilton, Benjamin; Hardin, Joyce M.; He, Tianhua; Heard, Stephen B.; Henriques, Andre F.; Hernandez-poveda, Melissa; Hetherington-rauth, Molly C.; Hill, Sarah J.; Hochuli, Dieter F.; Hodgins, Kathryn A.; Hood, Glen R.; Hopkins, Gareth R.; Hovanes, Katherine A.; Howard, Ava R.; Hubbard, Sierra C.; Ibarra-cerdena, Carlos N.; Iniguez-armijos, Carlos; Jara-arancio, Paola; Jarrett, Benjamin J. M.; Jeannot, Manon; Jimenez-lobato, Vania; Johnson, Mae; Johnson, Oscar; Johnson, Philip P.; Johnson, Reagan; Josephson, Matthew P.; Jung, Meen Chel; Just, Michael G.; Kahilainen, Aapo; Kailing, Otto S.; Karinho-betancourt, Eunice; Karousou, Regina; Kirn, Lauren A.; Kirschbaum, Anna; Laine, Anna-liisa; Lamontagne, Jalene M.; Lampei, Christian; Lara, Carlos; Larson, Erica L.; Lazaro-lobo, Adrian; Le, Jennifer H.; Leandro, Deleon S.; Lee, Christopher; Lei, Yunting; Leon, Carolina A.; Tamara, Manuel E. Lequerica; Levesque, Danica C.; Liao, Wan-jin; Ljubotina, Megan; Locke, Hannah; Lockett, Martin T.; Longo, Tiffany C.; Lundholm, Jeremy T.; Macgillavry, Thomas; Mackin, Christopher R.; Mahmoud, Alex R.; Manju, Isaac A.; Marien, Janine; Martinez, D. Nayeli; Martinez-bartolome, Marina; Meineke, Emily K.; Mendoza-arroyo, Wendy; Merritt, Thomas J. S.; Merritt, Lila Elizabeth L.; Migiani, Giuditta; Minor, Emily S.; Mitchell, Nora; Bazargani, Mitra Mohammadi; Moles, Angela T.; Monk, Julia D.; Moore, Christopher M.; Morales-morales, Paula A.; Moyers, Brook T.; Munoz-rojas, Miriam; Munshi-south, Jason; Murphy, Shannon M.; Murua, Maureen M.; Neila, Melisa; Nikolaidis, Ourania; Njunji, Iva; Nosko, Peter; Nunez-farfan, Juan; Ohgushi, Takayuki; Olsen, Kenneth M.; Opedal, Oystein H.; Ornelas, Cristina; Parachnowitsch, Amy L.; Paratore, Aaron S.; Parody-merino, Angela M.; Paule, Juraj; Paulo, Octavio S.; Pena, Joao Carlos; Pfeiffer, Vera W.; Pinho, Pedro; Piot, Anthony; Porth, Ilga M.; Poulos, Nicholas; Puentes, Adriana; Qu, Jiao; Quintero-vallejo, Estela; Raciti, Steve M.; Raeymaekers, Joost A. M.; Raveala, Krista M.; Rennison, Diana J.; Ribeiro, Milton C.; Richardson, Jonathan L.; Rivas-torres, Gonzalo; Rivera, Benjamin J.; Roddy, Adam B.; Rodriguez-munoz, Erika; Roman, Jose Raul; Rossi, Laura S.; Rowntree, Jennifer K.; Ryan, Travis J.; Salinas, Santiago; Sanders, Nathan J.; Santiago-rosario, Luis Y.; Savage, Amy M.; Scheepens, J. F.; Schilthuizen, Menno; Schneider, Adam C.; Scholier, Tiffany; Scott, Jared L.; Shaheed, Summer A.; Shefferson, Richard P.; Shepard, Caralee A.; Shykoff, Jacqui A.; Silveira, Georgianna; Smith, Alexis D.; Solis-gabriel, Lizet; Soro, Antonella; Spellman, Katie, V; Whitney, Kaitlin Stack; Starke-ottich, Indra; Stephan, Jorg G.; Stephens, Jessica D.; Szulc, Justyna; Szulkin, Marta; Tack, Ayco J. M.; Tamburrino, Italo; Tate, Tayler D.; Tergemina, Emmanuel; Theodorou, Panagiotis; Thompson, Ken A.; Threlfall, Caragh G.; Tinghitella, Robin M.; Toledo-chelala, Lilibeth; Tong, Xin; Uroy, Lea; Utsumi, Shunsuke; Vandegehuchte, Martijn L.; Vanwallendael, Acer; Vidal, Paula M.; Wadgymar, Susana M.; Wang, Ai-ying; Wang, Nian; Warbrick, Montana L.; Whitney, Kenneth D.; Wiesmeier, Miriam; Wiles, J. Tristian; Wu, Jianqiang; Xirocostas, Zoe A.; Yan, Zhaogui; Yao, Jiahe; Yoder, Jeremy B.; Yoshida, Owen; Zhang, Jingxiong; Zhao, Zhigang; Ziter, Carly D.; Zuellig, Matthew P.; Zufall, Rebecca A.; Zurita, Juan E.; Zytynska, Sharon E.; Johnson, Marc T. J. (2022). Global Urban Environmental Change Drives Adaptation in White Clover. Science, 375(6586), 1275+.

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Abstract

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural dines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale.

Keywords

Surface Temperature Retrieval; Cyanogenesis Clines; Hydrogen-cyanide; Gene Flow; F-st; Evolution; Polymorphism; Emissivity; Discovery; Framework; Drought; Urban Environments; Urbanization; Environmental Changes; Herbivory; Urban Development; Adaptation; Chemical Defense; Urban Areas; Data Collection; Trifolium Repens