Urban Ecology Research Lab Archives

Integration of Urban Science and Urban Climate Adaptation Research: Opportunities to Advance Climate Action

Lobo, J., Aggarwal, R. M., Alberti, M., Allen-Dumas, M., Bettencourt, L. M. A., Boone, C., Brelsford, C., Broto, V. C., Eakin, H., Bagchi-Sen, S., Meerow, S., D’Cruz, C., Revi, A., Roberts, D. C., Smith, M. E., York, A., Lin, T., Bai, X., Solecki, W., … Gauthier, N. (2023). Integration of urban science and urban climate adaptation research: opportunities to advance climate action. Npj Urban Sustainability, 3(1), 32–39. https://doi.org/10.1038/s42949-023-00113-0

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Abstract

There is a growing recognition that responding to climate change necessitates urban adaptation. We sketch a transdisciplinary research effort, arguing that actionable research on urban adaptation needs to recognize the nature of cities as social networks embedded in physical space. Given the pace, scale and socioeconomic outcomes of urbanization in the Global South, the specificities and history of its cities must be central to the study of how well-known agglomeration effects can facilitate adaptation. The proposed effort calls for the co-creation of knowledge involving scientists and stakeholders, especially those historically excluded from the design and implementation of urban development policies.

Say Where You Sample: Increasing Site Selection Transparency in Urban Ecology

Dyson, Karen; Dawwas, Emad; Poulton Kamakura, Renata; Alberti, Marina; Fuentes, Tracy L. (2023). Say Where You Sample: Increasing Site Selection Transparency in Urban Ecology. Ecosphere, 14(3).

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Abstract

Urban ecological studies have the potential to expand our understanding of socioecological systems beyond that of an individual city or region. Cross-comparative empirical work and synthesis are imperative to develop a general urban ecological theory. This can be achieved only if studies are replicable and generalizable. Transparency in methods reporting facilitates generalizability and replicability by documenting the decisions scientists make during the various steps of research design; this is particularly true for sampling design and selection because of their impact on both internal and external validity and the potential to unintentionally introduce bias. Three interdependent aspects of sample design are study sample selection (e.g., specific organisms, soils, or water), sample specification (measurement of specific variable of interest), and site selection (locations sampled). Of these, documentation of site selection—the where component of sample design—is underrepresented in the urban ecology literature. Using a stratified random sample of 158 papers from 12 major urban ecology journals, we investigated how researchers selected study sites in urban ecosystems and evaluated whether their site selection methods were transparent. We extracted data from these papers using a 50-question, theory-based questionnaire and a multiple-reviewer approach. Our sample represented almost 45 years of urban ecology research across 40 different countries. We found that more than 80% of the papers we read were not transparent in their site selection methodology. We do not believe site selection methods are replicable for 70% of the papers read. Key weaknesses include incomplete descriptions of populations and sampling frames, urban gradients, sample selection methods, and property access. Low transparency in reporting the where methodology limits urban ecologists' ability to assess the internal and external validity of studies' findings and to replicate published studies; it also limits the generalizability of existing studies. The challenges of low transparency are particularly relevant in urban ecology, a field where standard protocols for site selection and delineation are still being developed. These limitations interfere with the fields' ability to build theory and inform policy. We conclude by offering a set of recommendations to increase transparency, replicability, and generalizability.

Keywords

external validity, field ecology, generalizability, internal validity, replication, reproducibility, sampling design, site selection, theory building, transparency

A Global Horizon Scan for Urban Evolutionary Ecology

Verrelli, Brian C.; Alberti, Marina; Des Roches, Simone; Harris, Nyeema C.; Hendry, Andrew P.; Johnson, Marc T. J.; Savage, Amy M.; Charmantier, Anne; Gotanda, Kiyoko M.; Govaert, Lynn; Miles, Lindsay S.; Rivkin, L. Ruth; Winchell, Kristin M.; Brans, Kristien I.; Correa, Cristian; Diamond, Sarah E.; Fitzhugh, Ben; Grimm, Nancy B.; Hughes, Sara; Marzluff, John M.; Munshi-south, Jason; Rojas, Carolina; Santangelo, James S.; Schell, Christopher J.; Schweitzer, Jennifer A.; Szulkin, Marta; Urban, Mark C.; Zhou, Yuyu; Ziter, Carly. (2022). A Global Horizon Scan for Urban Evolutionary Ecology. Trends In Ecology & Evolution, 37(11), 1006-1019.

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Abstract

Research on the evolutionary ecology of urban areas reveals how human-induced evolutionary changes affect biodiversity and essential ecosystem services. In a rapidly urbanizing world imposing many selective pressures, a time-sensitive goal is to identify the emergent issues and research priorities that affect the ecology and evolution of species within cities. Here, we report the results of a horizon scan of research questions in urban evolutionary ecology submitted by 100 interdisciplinary scholars. We identified 30 top questions organized into six themes that highlight priorities for future research. These research questions will require methodological advances and interdisciplinary collaborations, with continued revision as the field of urban evolutionary ecology expands with the rapid growth of cities.

Keywords

Urban Ecology; Sustainability; Cities & Towns; Ecosystem Dynamics; Urban Growth; Ecosystem Services; Urban Research; Climate Change; Sociopolitical; Urban Evolution; Urbanization; Human Health; Biodiversity; Adaptation; Challenges; Dynamics; Management; Invasion; Science

Back to the Future: Reintegrating Biology to Understand How Past Eco-evolutionary Change Can Predict Future Outcomes

Thompson, Cynthia L.; Alberti, Marina; Barve, Sahas; Battistuzzi, Fabia U.; Drake, Jeana L.; Goncalves, Guilherme Casas; Govaert, Lynn; Partridge, Charlyn; Yang, Ya. (2022). Back to the Future: Reintegrating Biology to Understand How Past Eco-evolutionary Change Can Predict Future Outcomes. Integrative And Comparative Biology, 61(6), 2218-2232.

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Abstract

During the last few decades, biologists have made remarkable progress in understanding the fundamental processes that shape life. But despite the unprecedented level of knowledge now available, large gaps still remain in our understanding of the complex interplay of eco-evolutionary mechanisms across scales of life. Rapidly changing environments on Earth provide a pressing need to understand the potential implications of eco-evolutionary dynamics, which can be achieved by improving existing eco-evolutionary models and fostering convergence among the sub-fields of biology. We propose a new, data-driven approach that harnesses our knowledge of the functioning of biological systems to expand current conceptual frameworks and develop corresponding models that can more accurately represent and predict future eco-evolutionary outcomes. We suggest a roadmap toward achieving this goal. This long-term vision will move biology in a direction that can wield these predictive models for scientific applications that benefit humanity and increase the resilience of natural biological systems. We identify short, medium, and long-term key objectives to connect our current state of knowledge to this long-term vision, iteratively progressing across three stages: (1) utilizing knowledge of biological systems to better inform eco-evolutionary models, (2) generating models with more accurate predictions, and (3) applying predictive models to benefit the biosphere. Within each stage, we outline avenues of investigation and scientific applications related to the timescales over which evolution occurs, the parameter space of eco-evolutionary processes, and the dynamic interactions between these mechanisms. The ability to accurately model, monitor, and anticipate eco-evolutionary changes would be transformational to humanity's interaction with the global environment, providing novel tools to benefit human health, protect the natural world, and manage our planet's biosphere.

Keywords

Rapid Evolution; Ecological Interactions; Niche Construction; Climate-change; Phenotype; Community; Selection; Fitness; Consequences; Variability

Ecological Design For Urban Waterfronts

Dyson, Karen; Yocom, Ken. (2015). Ecological Design For Urban Waterfronts. Urban Ecosystems, 18(1), 189 – 208.

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Abstract

Urban waterfronts are rarely designed to support biodiversity and other ecosystem services, yet have the potential to provide these services. New approaches that integrate ecological research into the design of docks and seawalls provide opportunities to mitigate the environmental impacts of urbanization and recover ecosystem function in urban waterfronts. A review of current examples of ecological design in temperate cities informs suggestions for future action. Conventional infrastructures have significant and diverse impacts on aquatic ecosystems. The impacts of conventional infrastructure are reduced where ecological designs have been implemented, particularly by projects adding microhabitat, creating more shallow water habitat, and reconstructing missing or altered rocky benthic habitats. Opportunities for future research include expanding current research into additional ecosystems, examining ecological processes and emergent properties to better address ecosystem function in ecological design, and addressing the impact of and best practices for continuing maintenance. Planned ecological infrastructure to replace aging and obsolete structures will benefit from design feedback derived from carefully executed in situ pilot studies.

Keywords

Coastal Defense Structures; Fixed Artificial Habitats; Marine Habitats; Intertidal Seawalls; Benthic Communities; Reconciliation Ecology; Subtidal Epibiota; Rocky Shores; Reef; Biodiversity; Ecological Design; Seawalls; Habitat; Waterfront; Urban Infrastructure; Aquatic Ecology

Triggering a Climate Change Dominated Anthropocene: Is it Common Among Exocivilizations

Savitch, Ethan; Frank, Adam; Carroll-Nellenback, Jonathan; Haqq-Misra, Jacob; Kleidon, Axel; Alberti, Marina. (2021). Triggering a Climate Change Dominated Anthropocene: Is it Common Among Exocivilizations? Astronomical Journal, 162(5).

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Abstract

We seek to model the coupled evolution of a civilization and its host planet through the era when energy harvesting by the civilization drives the planet into new and adverse climate states. In this way, we ask if triggering Anthropocenes of the kind humanity is experiencing might be a generic feature of planet-civilization evolution. This question has direct consequences for both the study of astrobiology and the sustainability of human civilization. Furthermore, if Anthropocenes prove fatal for some civilizations then they can be considered as one form of a Great Filter and are therefore relevant to discussions of the Fermi Paradox. In this study, we focus on the effects of energy harvesting via combustion and vary the planet's initial chemistry and orbital radius. We find that in this context, the most influential parameter dictating a civilization's fate is their host planet's climate sensitivity, which quantifies how global temperatures change as CO2 is added to the atmosphere. Furthermore, this is in itself a function of the planet's atmospheric CO2 level, so planets with low levels of CO2 will have high climate sensitivities and high probabilities of triggering climate change. Using simulations of the coupled nonlinear model combined with semi-analytic treatments, we find that most planets in our initial parameter space experience diminished growth due to climate effects, an event we call a climate-dominated Anthropocene.

Keywords

Habitable Planets; Complex Life; Evolution; Earth

Advancing Urban Ecology toward a Science of Cities

McPhearson, Timon; Pickett, Steward T. A.; Grimm, Nancy B.; Niemela, Jari; Alberti, Marina; Elmqvist, Thomas; Weber, Christiane; Haase, Dagmar; Breuste, Juergen; Qureshi, Salman. (2016). Advancing Urban Ecology toward a Science of Cities. Bioscience, 66(3), 198 – 212.

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Abstract

Urban ecology is a field encompassing multiple disciplines and practical applications and has grown rapidly. However, the field is heterogeneous as a global inquiry with multiple theoretical and conceptual frameworks, variable research approaches, and a lack of coordination among multiple schools of thought and research foci. Here, we present an international consensus on how urban ecology can advance along multiple research directions. There is potential for the field to mature as a holistic, integrated science of urban systems. Such an integrated science could better inform decisionmakers who need increased understanding of complex relationships among social, ecological, economic, and built infrastructure systems. To advance the field requires conceptual synthesis, knowledge and data sharing; cross-city comparative research, new intellectual networks, and engagement with additional disciplines. We consider challenges and opportunities for understanding dynamics of urban systems. We suggest pathways for advancing urban ecology research to support the goals of improving urban sustainability and resilience, conserving urban biodiversity, and promoting human well-being on an urbanizing planet.

Keywords

Urban Ecology (biology); Urban Biodiversity; Urbanization & The Environment; Life Sciences; Medical Sciences; Comparative Research; Complexity; Conceptual Frameworks; Urban Ecology; Urban Systems; Ecosystem Services; Green Spaces; Resilience; Framework; Systems; Design; Water; Tree

Detecting Patterns of Vertebrate Biodiversity Across the Multidimensional Urban Landscape

Alberti, Marina; Wang, Tianzhe. (2022). Detecting Patterns of Vertebrate Biodiversity Across the Multidimensional Urban Landscape. Ecology Letters, 25(4), 1027 – 1045.

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Abstract

Explicit characterisation of the complexity of urban landscapes is critical for understanding patterns of biodiversity and for detecting the underlying social and ecological processes that shape them. Urban environments exhibit variable heterogeneity and connectivity, influenced by different historical contingencies, that affect community assembly across scales. The multidimensional nature of urban disturbance and co-occurrence of multiple stressors can cause synergistic effects leading to nonlinear responses in populations and communities. Yet, current research design of urban ecology and evolutionary studies typically relies on simple representation of the parameter space that can be observed. Sampling approaches apply simple urban gradients such as linear transects in space or comparisons of urban sites across the urban mosaic accounting for a few variables. This rarely considers multiple dimensions and scales of biodiversity, and proves to be inadequate to explain observed patterns. We apply a multidimensional approach that integrates distinctive social, ecological and built characteristics of urban landscapes, representing variations along dimensions of heterogeneity, connectivity and historical contingency. Measuring species richness and beta diversity across 100 US metropolitan areas at the city and 1-km scales, we show that distinctive signatures of urban biodiversity can result from interactions between socioecological heterogeneity and connectivity, mediated by historical contingency.

Keywords

Urban Biodiversity; Biodiversity; Species Diversity; Urban Planning; Landscape Ecology; Metropolitan Areas; Beta Diversity; Multidimensional Landscape; Scaling; Spatial Scales; Species Richness; Urban Gradients; Vertebrate Species; Ecological-systems; Diversity; Urbanization; Conservation; Ecosystems; Heterogeneity; Connectivity; Population; Complexity; Evolution; Urban Environments; Synergistic Effect; Nonlinear Response; Research Design; Contingency; Urban Areas; Vertebrates

Revitalizing Urban Waterfronts: Identifying Indicators For Human Well-being

Yocom, Ken P.; Andrews, Leann; Faghin, Nicole; Dyson, Karen; Leschine, Thomas; Nam, Jungho. (2016). Revitalizing Urban Waterfronts: Identifying Indicators For Human Well-being. Aims Environmental Science, 3(3), 456 – 473.

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Abstract

Waterfront cities worldwide have begun the process of regenerating and developing their formerly industrial waterfronts into land uses that reflect a post-industrial economic vision of mixed urban uses supporting a diverse economy and wide range of infrastructure. These revitalization projects require distinct planning and management tactics to determine project-defined successes inclusive of economic, ecological, and human well-being perspectives. While empirically developed templates for economic and ecological measures exist, the multi-dimensionality and subjective nature of human well-being is more difficult to assess. Through an extensive review of indicator frameworks and expert interviews, our research proposes an organizational, yet adaptable, human well-being indicators framework for the management and development of urban waterfront revitalization projects. We analyze the framework through the lens of two waterfront projects in the Puget Sound region of the United States and identify several key factors necessary to developing project-specific human well-being indicator frameworks for urban waterfront revitalization projects. These factors include: initially specify goals and objectives of a given project, acknowledge contextual conditions including prospective land uses and projected users, identify the stage of development or management to use appropriate indicators for that stage, and develop and utilize data sources that are at a similar scale to the size of the project.

Keywords

Quality-of-life; City Waterfront; Dimensions; Framework; Science; Policy; Urban Waterfront Revitalization; Human Well-being; Indicators; Design And Management

Global Urban Environmental Change Drives Adaptation in White Clover

Santangelo, James S.; Ness, Rob W.; Cohan, Beata; Fitzpatrick, Connor R.; Innes, Simon G.; Koch, Sophie; Miles, Lindsay S.; Munim, Samreen; Peres-neto, Pedro R.; Prashad, Cindy; Tong, Alex T.; Aguirre, Windsor E.; Akinwole, Philips O.; Alberti, Marina; Alvarez, Jackie; Anderson, Jill T.; Anderson, Joseph J.; Ando, Yoshino; Andrew, Nigel R.; Angeoletto, Fabio; Anstett, Daniel N.; Anstett, Julia; Aoki-goncalves, Felipe; Arietta, A. Z. Andis; Arroyo, Mary T. K.; Austen, Emily J.; Baena-diaz, Fernanda; Barker, Cory A.; Baylis, Howard A.; Beliz, Julia M.; Benitez-mora, Alfonso; Bickford, David; Biedebach, Gabriela; Blackburn, Gwylim S.; Boehm, Mannfred M. A.; Bonser, Stephen P.; Bonte, Dries; Bragger, Jesse R.; Branquinho, Cristina; Brans, Kristien, I; Bresciano, Jorge C.; Brom, Peta D.; Bucharova, Anna; Burt, Briana; Cahill, James F.; Campbell, Katelyn D.; Carlen, Elizabeth J.; Carmona, Diego; Castellanos, Maria Clara; Centenaro, Giada; Chalen, Izan; Chaves, Jaime A.; Chavez-pesqueira, Mariana; Chen, Xiao-yong; Chilton, Angela M.; Chomiak, Kristina M.; Cisneros-heredia, Diego F.; Cisse, Ibrahim K.; Classen, Aimee T.; Comerford, Mattheau S.; Fradinger, Camila Cordoba; Corney, Hannah; Crawford, Andrew J.; Crawford, Kerri M.; Dahirel, Maxime; David, Santiago; De Haan, Robert; Deacon, Nicholas J.; Dean, Clare; Del-val, Ek; Deligiannis, Eleftherios K.; Denney, Derek; Dettlaff, Margarete A.; Dileo, Michelle F.; Ding, Yuan-yuan; Dominguez-lopez, Moises E.; Dominoni, Davide M.; Draud, Savannah L.; Dyson, Karen; Ellers, Jacintha; Espinosa, Carlos, I; Essi, Liliana; Falahati-anbaran, Mohsen; Falcao, Jessica C. F.; Fargo, Hayden T.; Fellowes, Mark D. E.; Fitzpatrick, Raina M.; Flaherty, Leah E.; Flood, Padraic J.; Flores, Maria F.; Fornoni, Juan; Foster, Amy G.; Frost, Christopher J.; Fuentes, Tracy L.; Fulkerson, Justin R.; Gagnon, Edeline; Garbsch, Frauke; Garroway, Colin J.; Gerstein, Aleeza C.; Giasson, Mischa M.; Girdler, E. Binney; Gkelis, Spyros; Godsoe, William; Golemiec, Anneke M.; Golemiec, Mireille; Gonzalez-lagos, Cesar; Gorton, Amanda J.; Gotanda, Kiyoko M.; Granath, Gustaf; Greiner, Stephan; Griffiths, Joanna S.; Grilo, Filipa; Gundel, Pedro E.; Hamilton, Benjamin; Hardin, Joyce M.; He, Tianhua; Heard, Stephen B.; Henriques, Andre F.; Hernandez-poveda, Melissa; Hetherington-rauth, Molly C.; Hill, Sarah J.; Hochuli, Dieter F.; Hodgins, Kathryn A.; Hood, Glen R.; Hopkins, Gareth R.; Hovanes, Katherine A.; Howard, Ava R.; Hubbard, Sierra C.; Ibarra-cerdena, Carlos N.; Iniguez-armijos, Carlos; Jara-arancio, Paola; Jarrett, Benjamin J. M.; Jeannot, Manon; Jimenez-lobato, Vania; Johnson, Mae; Johnson, Oscar; Johnson, Philip P.; Johnson, Reagan; Josephson, Matthew P.; Jung, Meen Chel; Just, Michael G.; Kahilainen, Aapo; Kailing, Otto S.; Karinho-betancourt, Eunice; Karousou, Regina; Kirn, Lauren A.; Kirschbaum, Anna; Laine, Anna-liisa; Lamontagne, Jalene M.; Lampei, Christian; Lara, Carlos; Larson, Erica L.; Lazaro-lobo, Adrian; Le, Jennifer H.; Leandro, Deleon S.; Lee, Christopher; Lei, Yunting; Leon, Carolina A.; Tamara, Manuel E. Lequerica; Levesque, Danica C.; Liao, Wan-jin; Ljubotina, Megan; Locke, Hannah; Lockett, Martin T.; Longo, Tiffany C.; Lundholm, Jeremy T.; Macgillavry, Thomas; Mackin, Christopher R.; Mahmoud, Alex R.; Manju, Isaac A.; Marien, Janine; Martinez, D. Nayeli; Martinez-bartolome, Marina; Meineke, Emily K.; Mendoza-arroyo, Wendy; Merritt, Thomas J. S.; Merritt, Lila Elizabeth L.; Migiani, Giuditta; Minor, Emily S.; Mitchell, Nora; Bazargani, Mitra Mohammadi; Moles, Angela T.; Monk, Julia D.; Moore, Christopher M.; Morales-morales, Paula A.; Moyers, Brook T.; Munoz-rojas, Miriam; Munshi-south, Jason; Murphy, Shannon M.; Murua, Maureen M.; Neila, Melisa; Nikolaidis, Ourania; Njunji, Iva; Nosko, Peter; Nunez-farfan, Juan; Ohgushi, Takayuki; Olsen, Kenneth M.; Opedal, Oystein H.; Ornelas, Cristina; Parachnowitsch, Amy L.; Paratore, Aaron S.; Parody-merino, Angela M.; Paule, Juraj; Paulo, Octavio S.; Pena, Joao Carlos; Pfeiffer, Vera W.; Pinho, Pedro; Piot, Anthony; Porth, Ilga M.; Poulos, Nicholas; Puentes, Adriana; Qu, Jiao; Quintero-vallejo, Estela; Raciti, Steve M.; Raeymaekers, Joost A. M.; Raveala, Krista M.; Rennison, Diana J.; Ribeiro, Milton C.; Richardson, Jonathan L.; Rivas-torres, Gonzalo; Rivera, Benjamin J.; Roddy, Adam B.; Rodriguez-munoz, Erika; Roman, Jose Raul; Rossi, Laura S.; Rowntree, Jennifer K.; Ryan, Travis J.; Salinas, Santiago; Sanders, Nathan J.; Santiago-rosario, Luis Y.; Savage, Amy M.; Scheepens, J. F.; Schilthuizen, Menno; Schneider, Adam C.; Scholier, Tiffany; Scott, Jared L.; Shaheed, Summer A.; Shefferson, Richard P.; Shepard, Caralee A.; Shykoff, Jacqui A.; Silveira, Georgianna; Smith, Alexis D.; Solis-gabriel, Lizet; Soro, Antonella; Spellman, Katie, V; Whitney, Kaitlin Stack; Starke-ottich, Indra; Stephan, Jorg G.; Stephens, Jessica D.; Szulc, Justyna; Szulkin, Marta; Tack, Ayco J. M.; Tamburrino, Italo; Tate, Tayler D.; Tergemina, Emmanuel; Theodorou, Panagiotis; Thompson, Ken A.; Threlfall, Caragh G.; Tinghitella, Robin M.; Toledo-chelala, Lilibeth; Tong, Xin; Uroy, Lea; Utsumi, Shunsuke; Vandegehuchte, Martijn L.; Vanwallendael, Acer; Vidal, Paula M.; Wadgymar, Susana M.; Wang, Ai-ying; Wang, Nian; Warbrick, Montana L.; Whitney, Kenneth D.; Wiesmeier, Miriam; Wiles, J. Tristian; Wu, Jianqiang; Xirocostas, Zoe A.; Yan, Zhaogui; Yao, Jiahe; Yoder, Jeremy B.; Yoshida, Owen; Zhang, Jingxiong; Zhao, Zhigang; Ziter, Carly D.; Zuellig, Matthew P.; Zufall, Rebecca A.; Zurita, Juan E.; Zytynska, Sharon E.; Johnson, Marc T. J. (2022). Global Urban Environmental Change Drives Adaptation in White Clover. Science, 375(6586), 1275+.

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Abstract

Urbanization transforms environments in ways that alter biological evolution. We examined whether urban environmental change drives parallel evolution by sampling 110,019 white clover plants from 6169 populations in 160 cities globally. Plants were assayed for a Mendelian antiherbivore defense that also affects tolerance to abiotic stressors. Urban-rural gradients were associated with the evolution of clines in defense in 47% of cities throughout the world. Variation in the strength of clines was explained by environmental changes in drought stress and vegetation cover that varied among cities. Sequencing 2074 genomes from 26 cities revealed that the evolution of urban-rural dines was best explained by adaptive evolution, but the degree of parallel adaptation varied among cities. Our results demonstrate that urbanization leads to adaptation at a global scale.

Keywords

Surface Temperature Retrieval; Cyanogenesis Clines; Hydrogen-cyanide; Gene Flow; F-st; Evolution; Polymorphism; Emissivity; Discovery; Framework; Drought; Urban Environments; Urbanization; Environmental Changes; Herbivory; Urban Development; Adaptation; Chemical Defense; Urban Areas; Data Collection; Trifolium Repens